I'm not sure what you mean by 'generated sites'. But I'll answer as best I can.
Are you running your own server? Managed dedicated server perhaps? Or even shared hosting?
If it's shared hosting, then I'm guessing your host will not be happy with you. Delete the sites, apologies and hope the virus didn't do any damage to other peoples sites.
If you are on a managed dedicated server, then let your host know and hopefully they can help remedy the situation.
If you are running your own server, then I have no idea what to do. If there aren't any virus scanners which can remove it, then perhaps a full reinstall of the operating system is in order?
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